From: An enhanced RNA alignment benchmark for sequence alignment programs
RNA family | k2 | k3 | k5 | k7 | k10 | k15 | ∑ |
---|---|---|---|---|---|---|---|
5S_rRNA | 1162 | 568 | 288 | 150 | 90 | 50 | 2308 |
5_8S_rRNA | 76 | 45 | 17 | 5 | 3 | 0 | 146 |
Cobalamin | 188 | 61 | 15 | 4 | 0 | 0 | 268 |
Entero_5_CRE | 48 | 32 | 19 | 10 | 8 | 5 | 122 |
Entero_CRE | 65 | 38 | 20 | 13 | 8 | 4 | 148 |
Entero_OriR | 49 | 31 | 17 | 11 | 8 | 4 | 120 |
gcvT | 167 | 67 | 22 | 12 | 3 | 1 | 272 |
Hammerhead_1 | 53 | 32 | 9 | 1 | 0 | 0 | 95 |
Hammerhead_3 | 126 | 99 | 52 | 32 | 17 | 12 | 338 |
HCV_SLIV | 98 | 63 | 36 | 26 | 16 | 10 | 249 |
HCV_SLVII | 51 | 33 | 19 | 13 | 10 | 7 | 133 |
HepC_CRE | 45 | 29 | 18 | 11 | 7 | 3 | 113 |
Histone3 | 84 | 59 | 27 | 11 | 7 | 6 | 194 |
HIV_FE | 733 | 408 | 227 | 147 | 98 | 56 | 1669 |
HIV_GSL3 | 786 | 464 | 246 | 151 | 95 | 61 | 1803 |
HIV_PBS | 188 | 124 | 76 | 55 | 38 | 25 | 506 |
Intron_gpII | 181 | 82 | 35 | 22 | 11 | 4 | 335 |
IRES_HCV | 764 | 403 | 205 | 146 | 83 | 47 | 1648 |
IRES_Picorna | 181 | 117 | 75 | 53 | 35 | 25 | 486 |
K_chan_RES | 124 | 40 | 2 | 0 | 0 | 0 | 166 |
Lysine | 80 | 48 | 30 | 17 | 7 | 3 | 185 |
Retroviral_psi | 89 | 57 | 34 | 24 | 17 | 11 | 232 |
SECIS | 114 | 67 | 33 | 16 | 11 | 6 | 247 |
sno_14q I_II | 44 | 14 | 1 | 0 | 0 | 0 | 59 |
SRP_bact | 114 | 76 | 39 | 19 | 12 | 7 | 267 |
SRP_euk_arch | 122 | 94 | 42 | 21 | 12 | 6 | 297 |
S_box | 91 | 51 | 25 | 12 | 7 | 2 | 188 |
T-box | 18 | 8 | 0 | 0 | 0 | 0 | 26 |
TAR | 286 | 165 | 92 | 62 | 42 | 28 | 675 |
THI | 321 | 144 | 69 | 32 | 17 | 5 | 588 |
tRNA | 2039 | 1012 | 461 | 267 | 143 | 100 | 4022 |
U1 | 82 | 65 | 26 | 16 | 6 | 0 | 195 |
U2 | 112 | 83 | 38 | 22 | 14 | 7 | 276 |
U6 | 30 | 21 | 14 | 7 | 1 | 0 | 73 |
UnaL2 | 138 | 71 | 43 | 20 | 7 | 0 | 279 |
yybP-ykoY | 127 | 64 | 33 | 18 | 12 | 8 | 262 |
∑ | 8976 | 4835 | 2405 | 1426 | 845 | 503 | 18990 |