From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Method | Average runtime on BALIBASE 3 | Average runtime on BRAliBase II |
---|---|---|
DIALIGN-TX 1.0 | 33.37 | 0.15 |
DIALIGN-T 0.2.2 | 27.79 | 0.08 |
DIALIGN 2.2 | 45.41 | 0.09 |
CLUSTAL W2 | 8.72 | 0.07 |
T-COFFEE 5.56 | 315.78 | 1.95 |
POA V2 | 8.07 | 0.04 |
MAFFT 6.240 L-INSi | 19.51 | 0.26 |
MAFFT 6.240 E-INSi | 28.26 | 0.27 |
MUSCLE 3.7 | 10.49 | 0.05 |
PROBCONS(RNA) 1.12(1.10) | 168.65 | 0.24 |