From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Method | Average runtime on IRMBASE 2 | Average runtime on DIRMBASE 1 |
---|---|---|
DIALIGN-TX 1.0 | 4.47 | 9.84 |
DIALIGN-T 0.2.2 | 2.73 | 2.31 |
DIALIGN 2.2 | 4.98 | 4.82 |
CLUSTAL W2 | 1.86 | 1.36 |
T-COFFEE 5.56 | 26.41 | 365.88 |
POA V2 | 1.81 | 1.20 |
MAFFT 6.240 L-INSi | 8.47 | 5.33 |
MAFFT 6.240 E-INSi | 15.35 | 8.39 |
MUSCLE 3.7 | 6.34 | 4.87 |
PROBCONS(RNA) 1.12(1.10) | 28.27 | 18.54 |