Table 8 Sum-of-pairs scores on BRAliBase II
From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Method (DNA) | G2In | rRNA | SRP | tRNA | U5 | Total |
|---|---|---|---|---|---|---|
DIALIGN-TX 1.0 | 72.08 | 91.69 | 82.92 | 78.53 | 77.80 | 80.42 |
DIALIGN-T 0.2.2 | 54.68-- | 69.13-- | 60.81-- | 64.44-- | 67.87-- | 63.53-- |
DIALIGN 2.2 | 71.720 | 89.89-- | 81.47-- | 78.570 | 76.16-- | 79.37-- |
CLUSTAL W2 | 72.680 | 93.25+ | 87.40++ | 86.96++ | 79.56+ | 83.80++ |
T-COFFEE 5.56 | 73.790 | 90.94+ | 83.900 | 81.650 | 79.13+ | 81.73+ |
POA V2 | 67.22-- | 88.92-- | 85.47++ | 76.91- | 77.280 | 79.02-- |
MAFFT 6.240 L-INSi | 78.93++ | 93.85+ | 87.46++ | 91.79++ | 82.80++ | 86.84++ |
MAFFT 6.240 E-INSi | 77.39++ | 93.80+ | 87.24++ | 90.60++ | 80.46++ | 85.71++ |
MUSCLE 3.7 | 76.42++ | 94.04+ | 87.06++ | 87.27++ | 79.71+ | 84.69++ |
PROBCONSRNA 1.10 | 80.08 ++ | 94.48 ++ | 88.07 ++ | 92.58 ++ | 84.76 ++ | 87.90 ++ |