From: Reducing the worst case running times of a family of RNA and CFG problems, using Valiant’s approach
Problem | Standard DP running time | Implicit [explicit] VMT algorithm running time | |
---|---|---|---|
Results previously published | CFG Recognition/Parsing | [23] | |
WCFG Parsing | [17] | [25] | |
RNA Single Strand Folding | [25] | ||
RNA Partition Function | [10] | [25] | |
In this paper | WCFG Inside-Outside | [43] |
|
RNA Base Pair Binding Probabilities | [10] |
| |
RNA Simultaneous Alignment and Folding | [15] |
| |
RNA-RNA Interaction | [9] |
| |
RNA-RNA Interaction Partition Function | [12] |
| |
RNA Sequence to Structured-Sequence Alignment | [13] |
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