Table 1 Number of simple and structured motifs on biological datasets
From: Direct vs 2-stage approaches to structured motif finding
UASH-URS1_5 | |||
|---|---|---|---|
SISMA_smile | SISMA_speller | ||
Box (7,1) | 1,452 (∼10) | 420 (∼10) | |
Box (10,2) | 5,472 (∼5) | 92 (∼5) | |
Structured Motif | |||
(7,1) - [1,50] - (10,2) | 16,662 (∼5) | 14 (∼5) | |
UASH-URS1_10 | |||
SISMA_smile | SISMA_speller | ||
Box (3,1) | 64 (∼1000) | 64 (∼1000) | |
Box (5,2) | 1,024 (∼1000) | 942 (∼1000) | |
Box (9,1) | 103 (∼10) | 55 (∼10) | |
Structured Motif | |||
(3,1) - [ 1,1 ] - (5,2) - [ 1,200 ] - (9,1) | 2,309,173 (∼ 70) | 7,241 (∼ 70) | |
KAR4P | |||
SISMA_smile | SISMA_speller | ||
Box (3,1) | 64 (∼2000) | 64 (∼2000) | |
Box (4,1) | 256 (∼1000) | 256 (∼1000) | |
Box (2,1) | 16 (∼6000) | 16 (∼6000) | |
Structured Motif | |||
(3,1) - [2,2]- (4,1) - [2,2] -(3,1) -[1,1] - (2,1) | 101,750 (∼ 50) | 858 (∼ 50) | |