From: Space-efficient and exact de Bruijn graph representation based on a Bloom filter
Method | Minia | C. & B. | ABySS | SOAPdenovo |
---|---|---|---|---|
Value of k chosen | 27 | 27 | 27 | 25 |
Number of contigs (M) | 3.49 | 7.69 | 4.35 | - |
Longest contig (kbp) | 18.6 | 22.0 | 15.9 | - |
Contig N50 (bp) | 1156 | 250 | 870 | 886 |
Sum (Gbp) | 2.09 | 1.72 | 2.10 | 2.08 |
Nb of nodes/cores | 1/1 | 1/8 | 21/168 | 1/16 |
Time (wall-clock, h) | 23 | 50 | 15 | 33 |
Memory (sum | 5.7 | 32 | 336 | 140 |
of nodes, GB) |