Table 2 Total and per k-mer query times for the real (P. aeruginosa) and simulated (Y. pestis) dataset with peaks of main memory
From: Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
P. aeruginosa | Y. pestis | |||
|---|---|---|---|---|
BFT | SBT | BFT | SBT | |
Total query time (min) | 1.19 | 61.86 | 0.57 | 37.42 |
Query time per k-mer (μs) | 7.14 | 371.16 | 3.42 | 224.52 |
Peak of main memory (MB) | 2076 | 11,678 | 544 | 7775 |