Gerbil: a fast and memory-efficient k-mer counter with GPU-support

Table 2 Data sets (Additional file 1)

Data set	Format	Size (GB)	\(\varnothing\) Read length	# 28-mers	# Distinct 28-mers	Ratio (%)
F. vesca	FASTQ	10.2	352.1	4,134,078,256	632,436,468	15
M . balbisiana	FASTQ	98.6	100.0	20,531,572,597	965,691,662	4
G. gallus	FASTQ	115.9	100.0	25,337,974,831	2,727,529,829	11
H. sapiens	FASTQ	223.3	100.0	62,739,461,708	6,336,805,684	10
H. sapiens 2	FASTQ	339.5	100.0	98,892,620,173	6,634,382,141	7
GRCh38	FASTA	100.0	1000.0	97,300,000,000	1,802,953,276	2
N. crassa	FASTA	23.3	7778.3	22,808,741,626	21,769,513,655	95
A. thaliana	FASTQ	72.7	4804.6	35,905,278,785	32,894,281,429	92

The rightmost column ’Ratio‘ describes the ratio between the number of distinct 28-mers and the total number of 28-mers

ISSN: 1748-7188