Table 4 Detailed running times (in format mm:ss) and maximal main memory and disk space consumption (in GB) for the G. gallus instance
From: Gerbil: a fast and memory-efficient k-mer counter with GPU-support
k | System one | System two | |||||||
|---|---|---|---|---|---|---|---|---|---|
Gerbil | gGerbil | KMC | DSK | Gerbil | gGerbil | KMC | DSK | ||
Phase 1 | 28 | 10:04 | 10:03 | 10:51 | 10:22 | 09:49 | 09:49 | 09:52 | 09:30 |
Phase 2 | 28 | 10:26 | 06:20 | 04:46 | 16:00 | 06:25 | 03:01 | 03:16 | 11:01 |
Main memory | 28 | 2.14 | 2.14 | 14.28 | 15.28 | 2.21 | 1.79 | 26.99 | 16.69 |
Disk space | 28 | 23.66 | 23.66 | 24.86 | 37.30 | 23.66 | 23.66 | 24.86 | 37.30 |
Phase 1 | 56 | 10:01 | 10:06 | 10:40 | 10:26 | 09:49 | 09:49 | 09:47 | 09:30 |
Phase 2 | 56 | 08:56 | 05:25 | 09:08 | 13:13 | 05:27 | 03:05 | 06:59 | 10:00 |
Main memory | 56 | 3.97 | 4.59 | 14.29 | 15.00 | 4.01 | 3.41 | 26.98 | 14.78 |
Disk space | 56 | 16.25 | 16.25 | 17.02 | 57.20 | 16.25 | 16.25 | 17.02 | 57.20 |