From: Aligning coding sequences with frameshift extension penalties
fs_open_cost | Method | C1-002 vs B1-001 | C1-002 vs B2-202 | B1-001 vs B2-202 |
---|---|---|---|---|
−10 | fse0 | 0.42 (1) | 0.58 (2) | 0.45 (1) |
fse (-1) | 0.33 (1) | 0.27 (1) | 0.18 (1) | |
fse (-0.5) | 0.37 (1) | 0.43 (1) | 0.31 (1) | |
fse (-0.2) | 0.40 (1) | 0.52 (1) | 0.39 (1) | |
macse_p | 0.40 (4) | 0.54 (6) | 0.44 (1) | |
−20 | fse0 | 0.39 (1) | 0.54 (1) | 0.41 (1) |
fse (-1) | 0.36 (0) | 0.24 (1) | 0.14 (1) | |
fse (-0.5) | 0.34 (1) | 0.39 (1) | 0.28 (1) | |
fse (-0.2) | 0.37 (1) | 0.48 (1) | 0.36 (1) | |
macse_p | 0.33 (4) | 0.47 (6) | 0.35 (1) | |
−30 | fse0 | 0.35 (1) | 0.50 (1) | 0.38 (1) |
fse (-1) | 0.36 (0) | 0.20 (1) | 0.11 (1) | |
fse (-0.5) | 0.36 (0) | 0.35 (1) | 0.25 (1) | |
fse (-0.2) | 0.33 (1) | 0.44 (1) | 0.33 (1) | |
macse_p | 0.27 (4) | 0.39 (6) | 0.29 (1) | |
needlenuc | 0.16 (23) | 0.35 (15) | −0.36 (1) | |
needleprot | 0.38 (0) | −0.12 (0) | −0.13 (0) |