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Table 2 Real datasets used in the experimental evaluation

From: Fast phylogenetic inference from typing data

Dataset

Typing method

Profile length

Number of distinct elements

References

Campylobacter jejuni

wgMLST

5446

5669

(*)

Salmonella enterica

wgMLST

3002

6861

[13]

Salmonella typhi

SNP

22,143

1534

[36]

Streptococcus pneumoniae

cgMLST

235

1968

[37,38,39]

  1. (*) Dataset provided by the Molecular Microbiology and Infection Unit, IMM