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Fig. 5 | Algorithms for Molecular Biology

Fig. 5

From: Pfp-fm: an accelerated FM-index

Fig. 5

Illustration of the impact of the dataset size, and the length of the query pattern on the query time for answering count. We vary the length of the query pattern to be equal to 125, 250, 500, and 1000, and report the times for SARS-25K, SARS-50K, and SARS-100K. We illustrate the cumulative time required to perform 1,000 count queries. The y-axis is in \(\log \) scale

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Algorithms for Molecular Biology

ISSN: 1748-7188