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Fig. 7 | Algorithms for Molecular Biology

Fig. 7

From: Pfp-fm: an accelerated FM-index

Fig. 7

Comparison of query times for count between the described solutions when varying the length of the query pattern. For each pattern length equal to 125, 250, 500, and 1000, we report the times for the GRCH38 dataset. We plot the cumulative time required to perform 1000 count queries. The y-axis is in \(\log \) scale. \(\texttt {PFP-FM}\) is shown in blue, RLFM is shown in orange, RLCSA is shown in red, and FIGISS is shown in green

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Algorithms for Molecular Biology

ISSN: 1748-7188