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Table 3 Scoring method evaluation in terms of performance coefficient in biased-composition simulated data. Performance of LP/DEE in biased-composition simulated data. The first column identifies the TF dataset. The second column measures the degree of conservation of the known motif, as measured by average per-column information content [44]. The rest of the columns list the nucleotide performance coefficient of the LP/DEE method with the probability of base G indicated in the column heading and the frequencies of all other bases split equally.

From: A combinatorial optimization approach for diverse motif finding applications

TF IC Bias
   0.25 0.5 0.75 0.9
araC 1.00041 0.8113 0.9592 0.9592 0.9592
cpxR 1.17034 1.0000 0.8261 0.9811 0.9811
dnaA 1.45351 1.0000 0.7647 0.7647 1.0000
galR 1.34756 0.8824 0.8824 1.0000 1.0000
narP 1.40273 1.0000 1.0000 1.0000 1.0000