Table 3 Scoring method evaluation in terms of performance coefficient in biased-composition simulated data. Performance of LP/DEE in biased-composition simulated data. The first column identifies the TF dataset. The second column measures the degree of conservation of the known motif, as measured by average per-column information content [44]. The rest of the columns list the nucleotide performance coefficient of the LP/DEE method with the probability of base G indicated in the column heading and the frequencies of all other bases split equally.
From: A combinatorial optimization approach for diverse motif finding applications
TF | IC | Bias | |||
|---|---|---|---|---|---|
| Â | Â | 0.25 | 0.5 | 0.75 | 0.9 |
araC | 1.00041 | 0.8113 | 0.9592 | 0.9592 | 0.9592 |
cpxR | 1.17034 | 1.0000 | 0.8261 | 0.9811 | 0.9811 |
dnaA | 1.45351 | 1.0000 | 0.7647 | 0.7647 | 1.0000 |
galR | 1.34756 | 0.8824 | 0.8824 | 1.0000 | 1.0000 |
narP | 1.40273 | 1.0000 | 1.0000 | 1.0000 | 1.0000 |