Figure 3
From: A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Left image shows a portion of the graphical model for alternatively spliced exons. The right side of the figure shows two examples of parsing a target sequence. The top right example parses an intron retention sequence and the bottom right example parses a multiple splice site sequence. Blue states output partial subsequence of alternatively spliced exons, beige states are exons beginning with an acceptor and ending with a donor. Green states are introns.