Skip to main content

Table 4 ExAlt results on the initial training and testing set in percentages.

From: A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons

 

All Exons

 

Sens

Spec

ExAlt-Exon

82/-2

94/-1

ExAlt-Exon-ab initio

84/-3

86/+2

N-SCAN-Exon Union

82/0

82/-2

Augustus-Exon Union

81/0

81/+2

SNAP-Exon Union

81/0

77/0

SNAP+N-SCAN-Exon Union

83/0

72/0

Augustus+N-SCAN-Exon Union

83/0

75/-1

Aug.+SNAP+N-SCAN-Exon Union

84/0

68/+1

ExAlt-Frame

70/-2

87/-2

ExAlt-Frame-ab initio

72/-2

79/-3

ExAlt-Frame-Single

65/-1

91/-3

ExAlt-Default

65/0

78/-1

Ex Alt-Default -ab initio

65/0

66/-3

ExAlt-Default-Single

60/-1

84/-1

N-SCAN

56/-1

76/-2

Augustus

47/0

71/+2

SNAP

49/-1

67/0

  1. Included next to each measurement is the difference in percentage points compared to performance in the held out set in Table 2 and Table 3. (Aug. = Augustus)