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Table 2 Comparison of theoretical and empirical pattern statistic mean and standard deviation on Mycoplasma genitalium.

From: Pattern statistics on Markov chains and sensitivity to parameter estimation

m S σ S ^ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGtbWugaqcaaaa@2DEB@ σ ^ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaiiGacuWFdpWCgaqcaaaa@2E86@
1 42.48 0.38 42.47 0.40
2 44.62 0.78 44.62 0.81
3 55.96 1.49 56.02 1.52
4 55.06 3.39 55.48 3.48
5 56.49 10.35 57.21* 9.09*
  1. We consider the pattern W = acgtacgt with Nobs = 30. The sequence length is ℓ = 580 076, we use an order m Markov model and a sample of size M = 1 000. (*) for 123 terms in the sample we got P (N) = 0 and hence, S N was not computed.