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Table 5 Mean true positive rate and rank accordance rate in Mycoplasma genitalium.

From: Pattern statistics on Markov chains and sensitivity to parameter estimation

Markov order

1

2

3

4

5

6

TP rate

95.5%

93.6%

90.4%

81.8%

66.0%

25.0%

RA rate

92.6%

85.4%

79.8%

66.5%

45.1%

11.0%

× 103

48.33

12.08

3.02

0.76

0.19

0.05

  1. Both quantities are estimated with 1 000 simulations. We consider the 1 00 most over-represented octamers, the sequence length is ℓ = 580076. The last row gives the sample size per free parameter (length n of the sequence divided by the number km(k - 1) of parameters).
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Algorithms for Molecular Biology

ISSN: 1748-7188