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Table 5 Mean true positive rate and rank accordance rate in Mycoplasma genitalium.

From: Pattern statistics on Markov chains and sensitivity to parameter estimation

Markov order 1 2 3 4 5 6
TP rate 95.5% 93.6% 90.4% 81.8% 66.0% 25.0%
RA rate 92.6% 85.4% 79.8% 66.5% 45.1% 11.0%
× 103 48.33 12.08 3.02 0.76 0.19 0.05
  1. Both quantities are estimated with 1 000 simulations. We consider the 1 00 most over-represented octamers, the sequence length is ℓ = 580076. The last row gives the sample size per free parameter (length n of the sequence divided by the number km(k - 1) of parameters).
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Algorithms for Molecular Biology

ISSN: 1748-7188