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Table 1 Number of reference alignments and average Structure Conservation Index (SCI) for each alignment of k sequences.

From: An enhanced RNA alignment benchmark for sequence alignment programs

 

k2

k3

k5

k7

k10

k15

total

no. aln.

8976 (118)

4835

2405 (481)

1426

845

504

18990

∅ SCI

0.95 (1.05)

0.92

0.91 (0.87)

0.90

0.89

0.89

0.93

  1. Values for the previously used data-set1 [22] are given in brackets.