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Table 4 Comparison of default vs. RIBOSUM substitution matrix by Wilcoxon tests

From: An enhanced RNA alignment benchmark for sequence alignment programs

Program

k2

k3

k5

k7

k10

k15

ALIGN-M

/

+

+

+

/

/

CLUSTALW

-

-

-

-

-

-

POA

+

+

+

/

/

/

  1. If the use of the RIBOSUM 85–60 matrix resulted in a statistically significant performance increase in comparison to use of the default matrix this is indicated with a "+"; "-" indicates that the default matrix scores significantly better. If no statistical significance was found this is indicated with a "/".
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Algorithms for Molecular Biology

ISSN: 1748-7188