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Table 4 Comparison of default vs. RIBOSUM substitution matrix by Wilcoxon tests

From: An enhanced RNA alignment benchmark for sequence alignment programs

Program k2 k3 k5 k7 k10 k15
ALIGN-M / + + + / /
CLUSTALW - - - - - -
POA + + + / / /
  1. If the use of the RIBOSUM 85–60 matrix resulted in a statistically significant performance increase in comparison to use of the default matrix this is indicated with a "+"; "-" indicates that the default matrix scores significantly better. If no statistical significance was found this is indicated with a "/".