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Table 6 Number of reference alignments for each RNA family

From: An enhanced RNA alignment benchmark for sequence alignment programs

RNA family k2 k3 k5 k7 k10 k15
5S_rRNA 1162 568 288 150 90 50 2308
5_8S_rRNA 76 45 17 5 3 0 146
Cobalamin 188 61 15 4 0 0 268
Entero_5_CRE 48 32 19 10 8 5 122
Entero_CRE 65 38 20 13 8 4 148
Entero_OriR 49 31 17 11 8 4 120
gcvT 167 67 22 12 3 1 272
Hammerhead_1 53 32 9 1 0 0 95
Hammerhead_3 126 99 52 32 17 12 338
HCV_SLIV 98 63 36 26 16 10 249
HCV_SLVII 51 33 19 13 10 7 133
HepC_CRE 45 29 18 11 7 3 113
Histone3 84 59 27 11 7 6 194
HIV_FE 733 408 227 147 98 56 1669
HIV_GSL3 786 464 246 151 95 61 1803
HIV_PBS 188 124 76 55 38 25 506
Intron_gpII 181 82 35 22 11 4 335
IRES_HCV 764 403 205 146 83 47 1648
IRES_Picorna 181 117 75 53 35 25 486
K_chan_RES 124 40 2 0 0 0 166
Lysine 80 48 30 17 7 3 185
Retroviral_psi 89 57 34 24 17 11 232
SECIS 114 67 33 16 11 6 247
sno_14q I_II 44 14 1 0 0 0 59
SRP_bact 114 76 39 19 12 7 267
SRP_euk_arch 122 94 42 21 12 6 297
S_box 91 51 25 12 7 2 188
T-box 18 8 0 0 0 0 26
TAR 286 165 92 62 42 28 675
THI 321 144 69 32 17 5 588
tRNA 2039 1012 461 267 143 100 4022
U1 82 65 26 16 6 0 195
U2 112 83 38 22 14 7 276
U6 30 21 14 7 1 0 73
UnaL2 138 71 43 20 7 0 279
yybP-ykoY 127 64 33 18 12 8 262
8976 4835 2405 1426 845 503 18990