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Table 6 Number of reference alignments for each RNA family

From: An enhanced RNA alignment benchmark for sequence alignment programs

RNA family

k2

k3

k5

k7

k10

k15

∑

5S_rRNA

1162

568

288

150

90

50

2308

5_8S_rRNA

76

45

17

5

3

0

146

Cobalamin

188

61

15

4

0

0

268

Entero_5_CRE

48

32

19

10

8

5

122

Entero_CRE

65

38

20

13

8

4

148

Entero_OriR

49

31

17

11

8

4

120

gcvT

167

67

22

12

3

1

272

Hammerhead_1

53

32

9

1

0

0

95

Hammerhead_3

126

99

52

32

17

12

338

HCV_SLIV

98

63

36

26

16

10

249

HCV_SLVII

51

33

19

13

10

7

133

HepC_CRE

45

29

18

11

7

3

113

Histone3

84

59

27

11

7

6

194

HIV_FE

733

408

227

147

98

56

1669

HIV_GSL3

786

464

246

151

95

61

1803

HIV_PBS

188

124

76

55

38

25

506

Intron_gpII

181

82

35

22

11

4

335

IRES_HCV

764

403

205

146

83

47

1648

IRES_Picorna

181

117

75

53

35

25

486

K_chan_RES

124

40

2

0

0

0

166

Lysine

80

48

30

17

7

3

185

Retroviral_psi

89

57

34

24

17

11

232

SECIS

114

67

33

16

11

6

247

sno_14q I_II

44

14

1

0

0

0

59

SRP_bact

114

76

39

19

12

7

267

SRP_euk_arch

122

94

42

21

12

6

297

S_box

91

51

25

12

7

2

188

T-box

18

8

0

0

0

0

26

TAR

286

165

92

62

42

28

675

THI

321

144

69

32

17

5

588

tRNA

2039

1012

461

267

143

100

4022

U1

82

65

26

16

6

0

195

U2

112

83

38

22

14

7

276

U6

30

21

14

7

1

0

73

UnaL2

138

71

43

20

7

0

279

yybP-ykoY

127

64

33

18

12

8

262

∑

8976

4835

2405

1426

845

503

18990