Table 1 Pseudo periodic repeats of 1SRY (matrix:blosum62, gap penalty: -4)
From: Finding the region of pseudo-periodic tandem repeats in biological sequences
Unit | Pseudo-periodic unit | Length | Similarity with previous unit |
|---|---|---|---|
1 | MVDLKRLR | 8 | Â |
2 | QEPEVFHR | 8 | -5 |
3 | AIREKGVA | 8 | -10 |
4 | LDLEALLA | 8 | -1 |
5 | LDREVQEL | 8 | 7 |
6 | KKRLQEVQ | 8 | 6 |
7 | TERNQVA | 7 | 6 |
8 | KRVPKAP | 7 | -4 |
9 | PEEKEAL | 7 | -2 |
10 | IARGKAL | 7 | 3 |
11 | GEEAKRL | 7 | 3 |
12 | EEALRE | 6 | 10 |
13 | KEARLE | 6 | 12 |
14 | ALLLQV | 6 | -6 |
15 | PLPP | 4 | -8 |