Skip to main content

Table 4 Comparison of EXMOTIF and RISO for different quorums and allowed substitutions.

From: EXMOTIF: efficient structured motif extraction

Quorum

#Substitutions

RISO

EXMOTIF

EXMOTIF(#)

5%

(0, 0)

1.82s

1.42s

1.52s

30%

(1, 1)

63.01s

58.91s

64.52s

60%

(2, 2)

2763.31s

328.43s

2317.35s

90%

(3, 3)

13682.13s

707.56s

41464.93s

  1. The template used is T MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFtepvaaa@3847@ = NNNNNN[12,22]NNNNNN. #Substitutions shows the number of errors (e1, e2) allowed for the two simple components.
Back to article page

Algorithms for Molecular Biology

ISSN: 1748-7188