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Figure 9 | Algorithms for Molecular Biology

Figure 9

From: SMOTIF: efficient structured pattern and profile motif search

Figure 9

Profile Positional Joins and Full Position Recovery. The example sequence S has length 36. (a) Under each component M i , 1 ≤ i ≤ 3 a set of tuples are listed in the format (start position, subsequence, score, core score). (b) Minimum Simple Scores row gives the minimum score threshold for any prefix of a component; (c) Minimum Core Scores gives the minimum core score threshold for any prefix of core positions for each component; (d) Minimum Structured Scores gives the minimum score threshold for each (component-wise) suffix of the structured motif; (e) The final pos-lists and the index for each component; (f) The motifs (M) that satisfy the profile, along with their full positions (F).

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