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Table 11 Potential Binding Sites

From: SMOTIF: efficient structured pattern and profile motif search

Genes UASH URS1H Hamming Distance
  Site Pos Site Pos  
MES1 GATTTTGAAGTAGGA -438 TTAGCCGCCGA -246 5:MER1
YJL045W TTTTGTGAAGAGATA -407 TTAGCCGCTCA -273 4:DMC1
HSP60 GTTTTTGTAGGTATA -329 ATAGCCGCCCA -252 5:MER1
SPO1 ATTTTTGAAGTTAAC -192 TCAGCGGCTAT -90 5:RED1
MEK1 TCATTTGTAGTTTAT -233 TCGGCGGCTAT -136 3:MEK1
YIG1 ATTTCCGGAGTTTTC -183 TCGGCGGCTAT -140 5:RED1
AGP1 CCTTTTGATGACTTT -786 TCGGCGGCTAA -699 5:SPO16
AGPl CCTTTTGATGACTTT -786 TCGGCGGCTAA -668 5:SPO16
REC114 CATTTTGGTGGGTTC -158 TGGGCGGCTAA -94 5:SPO16
GNTl TCATTTGGAGAATAT -340 ATAGCCGCCAT -299 5:SPO13
MEK1 TTATATGCAGTATAT -276 ATGGCGGCTAA -150 4:MEK1
MMS1 AACTCTGTAGTTATA -643 TGGGCGGCTAA -497 5:REC114
  1. For each occurrence we give the gene names corresponding to the upstream region, the sites and positions for UASH and URS1H, and also the hamming distance and the closest known gene with the cooperative binding sites. For example, 5:SPO16 in the first row means that the hamming distance between AGP1 and SPO16 was 5. : found only by IUPAC pattern search, : found only by profile search.