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Table 9 Random Motifs: Mean and Variance

From: SMOTIF: efficient structured pattern and profile motif search

Algorithm

Mean(s)

Variance (s)

SMARTFINDER

44.42

24.85

SMOTIF-1 (full)

6.97

1.45

SMOTIF-1 (start)

6.93

1.46

SMOTIF-2 (full)

10.83

5.07

SMOTIF-2 (start)

10.81

5.07

SMOTIF-P (full)

9.67

2.95

SMOTIF-P (start)

9.66

2.97

  1. full gives the time for full position recovery, whereas start gives the time for reporting only the start positions.
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Algorithms for Molecular Biology

ISSN: 1748-7188