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Table 9 Random Motifs: Mean and Variance

From: SMOTIF: efficient structured pattern and profile motif search

Algorithm Mean(s) Variance (s)
SMARTFINDER 44.42 24.85
SMOTIF-1 (full) 6.97 1.45
SMOTIF-1 (start) 6.93 1.46
SMOTIF-2 (full) 10.83 5.07
SMOTIF-2 (start) 10.81 5.07
SMOTIF-P (full) 9.67 2.95
SMOTIF-P (start) 9.66 2.97
  1. full gives the time for full position recovery, whereas start gives the time for reporting only the start positions.