Skip to main content

Table 2 Position Weight Matrix. A count of nucleotides j {A, T, G, C} at each position k = 1..l in all the sequences of the data set. C k is the kthnucleotide of the consensus pattern which represents the nucleotide with the highest value in that column. Let the consensus pattern be GACT...G and b j be the background.

From: Refining motifs by improving information content scores using neighborhood profile search

j k = b k = 1 k = 2 K = 3 k = 4 ... k = l
A b A w 1 C 2 w 7 w 10 ... w 3l-2
T b T w 2 w 4 w 8 C 4 ... w 3l-1
G b G C 1 w 5 w 9 w 11 ... C l
C b C W 3 w 6 C 3 w 12 ... W 3l