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Table 4 Improvements in the Information Content Scores.

From: Refining motifs by improving information content scores using neighborhood profile search

(l, d) Initial Pattern Score First Tier Pattern Score Second Tier Pattern Score
(11,2) AACGGTCGCAG 125.1 CCCGGTCGCTG 147.1 CCCGGGAGCTG 153.3
(11,2) ATACCAGTTAC 145.7 ATACCAGTTTC 151.3 ATACCAGGGTC 153.6
(13,3) CTACGGTCGTCTT 142.6 CCACGGTTGTCTC 157.8 CCTCGGGTTTGTC 158.7
(13,3) GACGCTAGGGGGT 158.3 GAGGCTGGGCAGT 161.7 GACCTTGGGTATT 165.8
(15,4) CCGAAAAGAGTCCGA 147.5 CCGCAATGACTGGGT 169.1 CCGAAAGGACTGCGT 176.2
(15,4) TGGGTGATGCCTATG 164.6 TGGGTGATGCCTATG 166.7 TGAGAGATGCCTATG 170.4
(17,5) TTGTAGCAAAGGCTAAA 143.3 CAGTAGCAAAGACTACC 173.3 CAGTAGCAAAGACTTCC 175.8
(17,5) ATCGCGAAAGGTTGTGG 174.1 ATCGCGAAAGGATGTGG 176.7 ATTGCGAAAGAATGTGG 178.3
(20,6) CTGGTGATTGAGATCATCAT 165.9 CAGATGGTTGAGATCACCTT 186.9 CATTTAGCTGAGTTCACCTT 194.9
(20,6) GGTCACTTAGTGGCGCCATG 216.3 GGTCACTTAGTGGCGCCATG 218.8 CGTCACTTAGTCGCGCCATG 219.7
  1. The consensus patterns and their corresponding scores of the original local optimal solution obtained from multiple random starts on the synthetic data. The best first tier and second tier optimal patterns and their corresponding scores are also reported.