Table 5 Results on real datasets. Results of Exit-point method on biological samples. The real motifs were obtained in all the six cases using the Exit-point framework.
From: Refining motifs by improving information content scores using neighborhood profile search
Sequence | Sample Size | t | Best (20,2) Motif | Reference Motif |
|---|---|---|---|---|
E. coli CRP | 1890 | 18 | TGTGAAATAGATCACA TTTT | TGTGANNNNGNTCACA |
preproinsulin | 7689 | 4 | GGAAATTGCAGCCTCAGCCC | CCTCAGCCC |
DHFR | 800 | 4 | CTGCAATTTCGCGCCA AACT | ATTTCNNGCCA |
metallothionein | 6823 | 4 | CCCTCTGCGCCCGG ACCGGT | TGCRCYCGG |
c-fos | 3695 | 5 | CCATATTAGGACATCT GCGT | CCATATTAGAGACTCT |
yeast ECB | 5000 | 5 | GTATTTCCCGTTTAGGAAA A | TTTCCCNNTNAGGAAA |