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Table 4 Comparison of STM to competing clustering methods for clusters with 5 or more members

From: A novel functional module detection algorithm for protein-protein interaction networks

Method Number Size Discard(%) Function Location
STM 60 40.1 7.8 13.7 7.42
Maximal clique 120 5.65 98.4 10.6 7.93
Quasi clique 103 11.2 80.8 11.5 6.58
Samantha 64 7.9 79.9 9.16 4.89
Minimum cut 114 13.5 35.0 8.36 4.75
Bwtweenness cut 180 10.26 21.0 8.19 4.18
MCL 163 9.79 36.7 8.18 3.97
  1. Comparison of STM to competing clustering methods for the yeast protein-protein interaction data set for clusters with 5 or more members. The Number column indicates the number of clusters identified by each method, the Size column indicates the average number of proteins in each cluster; the Discard% indicates the percentage of proteins not assigned to any cluster. The -log p values for biological function and cellular location are shown.