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Figure 2 | Algorithms for Molecular Biology

Figure 2

From: Partition function and base pairing probabilities of RNA heterodimers

Figure 2

Dot plot (left) and mfe structure representation (right) of the cofolding structure of the two RNA molecules AUGAAGAUGA (red) and CUGUCUGUCUUGAGACA (blue). Dot Plot: Upper right: Partition function. The area of the squares is proportional to the corresponding pair probabilities. Lower left: Minimum free energy structure. The two lines forming a cross indicate the cut point, intermolecular base pairs are depicted in the green upper right (partition function) and lower left (mfe) rectangle.

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