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Table 6 Reliability of pattern statistics. They are computed in respect with an order m Markovian sequence of length n = 9719 which parameters are estimated on the HIV complete genome. Relative error uses FMCI statistics as reference.

From: Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics

pattern order observed expected FMCI SR relative error
acta 0 106 48.63 +12.208 +12.208 0.0
acta 1 106 47.01 +13.090 +13.079 8.7 × 10-4
acta 0 26 48.63 -3.567 -3.567 0.0
acta 1 26 47.01 -3.231 -3.230 4.8 × 10-4
acta 0 6 48.63 -13.856 -13.850 3.7 × 10-4
acta 1 6 47.01 -13.237 -13.237 3.0 × 10-5
at 0 50 759.48 -291.610 -291.610 0.0
at 0 25 759.48 -327.214 -318.192 2.8 × 10-2
at 0 0 759.48 -377.009 -319.607 1.5 × 10-1
tcgatc 0 185 1.37 +294.997 +294.997 0.0
tcgatc 0 195 1.37 +314.388 +314.388 5.7 × 10-8
tcgatc 0 205 1.37 +333.931 na na
acacaa 2 10 6.66 +0.865 +0.855 1.1 × 10-2
acacaa 2 20 6.66 +4.669 +4.520 3.2 × 10-2
acacaa 2 60 6.66 +35.751 +33.532 6.2 × 10-2
acacaa 2 100 6.66 +79.736 +73.451 7.8 × 10-2