Table 6 Reliability of pattern statistics. They are computed in respect with an order m Markovian sequence of length n = 9719 which parameters are estimated on the HIV complete genome. Relative error uses FMCI statistics as reference.
pattern | order | observed | expected | FMCI | SR | relative error |
|---|---|---|---|---|---|---|
acta | 0 | 106 | 48.63 | +12.208 | +12.208 | 0.0 |
acta | 1 | 106 | 47.01 | +13.090 | +13.079 | 8.7 × 10-4 |
acta | 0 | 26 | 48.63 | -3.567 | -3.567 | 0.0 |
acta | 1 | 26 | 47.01 | -3.231 | -3.230 | 4.8 × 10-4 |
acta | 0 | 6 | 48.63 | -13.856 | -13.850 | 3.7 × 10-4 |
acta | 1 | 6 | 47.01 | -13.237 | -13.237 | 3.0 × 10-5 |
at | 0 | 50 | 759.48 | -291.610 | -291.610 | 0.0 |
at | 0 | 25 | 759.48 | -327.214 | -318.192 | 2.8 × 10-2 |
at | 0 | 0 | 759.48 | -377.009 | -319.607 | 1.5 × 10-1 |
tcgatc | 0 | 185 | 1.37 | +294.997 | +294.997 | 0.0 |
tcgatc | 0 | 195 | 1.37 | +314.388 | +314.388 | 5.7 × 10-8 |
tcgatc | 0 | 205 | 1.37 | +333.931 | na | na |
acacaa | 2 | 10 | 6.66 | +0.865 | +0.855 | 1.1 × 10-2 |
acacaa | 2 | 20 | 6.66 | +4.669 | +4.520 | 3.2 × 10-2 |
acacaa | 2 | 60 | 6.66 | +35.751 | +33.532 | 6.2 × 10-2 |
acacaa | 2 | 100 | 6.66 | +79.736 | +73.451 | 7.8 × 10-2 |