TY - JOUR AU - Tompa, M. PY - 2005 DA - 2005// TI - Assessing Computational Tools for the Discovery of Transcription Factor Binding Sites JO - Nature Biotechnology VL - 23 UR - https://doi.org/10.1038/nbt1053 DO - 10.1038/nbt1053 ID - Tompa2005 ER - TY - JOUR AU - Matys, V. AU - Fricke, E. AU - Geffers, R. AU - Gling, E. AU - Haubrock, M. AU - Hehl, R. AU - Hornischer, K. AU - Karas, D. AU - Kel, A. E. AU - Kel-Margoulis, O. V. AU - Kloos, D. U. AU - Land, S. AU - Lewicki-Potapov, B. AU - Michael, H. AU - Mnch, R. AU - Reuter, I. AU - Rotert, S. AU - Saxel, H. AU - Scheer, M. AU - Thiele, S. AU - Wingender, E. PY - 2003 DA - 2003// TI - TRANSFAC: transcriptional regulation, from patterns to profiles JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg108 DO - 10.1093/nar/gkg108 ID - Matys2003 ER - TY - JOUR AU - Hertz, G. Z. AU - Stormo, G. D. PY - 1999 DA - 1999// TI - Identifying DNA and protein patterns with statistically significant alignments of multiple sequences JO - Bioinform VL - 15 UR - https://doi.org/10.1093/bioinformatics/15.7.563 DO - 10.1093/bioinformatics/15.7.563 ID - Hertz1999 ER - TY - CHAP AU - Bailey, T. L. AU - Elkan, C. PY - 1995 DA - 1995// TI - The value of prior knowledge in discovering motifs with MEME BT - Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology PB - AAAI Press Menlo Park CA CY - USA ID - Bailey1995 ER - TY - JOUR AU - Sinha, S. AU - Tompa, M. PY - 2003 DA - 2003// TI - YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation JO - Nuc Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg618 DO - 10.1093/nar/gkg618 ID - Sinha2003 ER - TY - CHAP AU - Workman, C. T. AU - Stormo, G. D. PY - 2000 DA - 2000// TI - ANN-Spec: a method for discovering transcription factor binding sites with improved specificity BT - Pac Symp Biocomput ID - Workman2000 ER - TY - JOUR AU - Pavesi, G. AU - Mereghetti, P. AU - Mauri, G. AU - Pesole, G. PY - 2004 DA - 2004// TI - Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes JO - Nuc Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh465 DO - 10.1093/nar/gkh465 ID - Pavesi2004 ER - TY - CHAP AU - McCullagh, P. AU - Nelder, J. A. PY - 1989 DA - 1989// BT - Generalized Linear Models UR - https://doi.org/10.1007/978-1-4899-3242-6 DO - 10.1007/978-1-4899-3242-6 ID - McCullagh1989 ER - TY - JOUR AU - Burset, M. AU - Guigo, R. PY - 1996 DA - 1996// TI - Evaluation of gene structure prediction programs JO - Genomics VL - 34 UR - https://doi.org/10.1006/geno.1996.0298 DO - 10.1006/geno.1996.0298 ID - Burset1996 ER - TY - JOUR AU - Neal, D. K. PY - 1996 DA - 1996// TI - Goodness of Fit Tests for Normality JO - Mathematica Educ Res VL - 5 ID - Neal1996 ER - TY - JOUR AU - Box, G. E. P. AU - Cox, D. R. PY - 1964 DA - 1964// TI - An analysis of transformations JO - Journal of the Royal Statistical Society series B VL - 26 ID - Box1964 ER - TY - JOUR AU - Hughes, J. D. AU - Estep, P. W. AU - Tavazoie, S. AU - Church, G. M. PY - 2000 DA - 2000// TI - Computational identification of cis-regulatory elements associated with functionally coherent groups of genes in Saccharomyces cerevisiae JO - J Mol Biol VL - 296 UR - https://doi.org/10.1006/jmbi.2000.3519 DO - 10.1006/jmbi.2000.3519 ID - Hughes2000 ER -