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Table 1 Amino acid clusters used in model "Cluster"

From: Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation

Cluster number:

Amino acids

1

A P S T

2

I L M V

3

F W Y

4

N D

5

G

6

R Q E H K

7

C

  1. These clusters were generated by applying the k-means algorithm to a distance matrix between the amino acids based upon BLOSUM62.
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Algorithms for Molecular Biology

ISSN: 1748-7188