Table 2 Out of 206 gene/TF interactions found in the RegulonDB (Salgado et al. 2004) and EcoCyc databases, 44 scored higher than the imposed threshold.
| Â | TF | Gene | Final Score | predicted sign | actual sign |
|---|---|---|---|---|---|
1 | ArcA-Phosphorylated | yfiD | 1.670768591 | up | up |
2 | ArgR-L-arginine | argG | 2.624262246 | down | down |
3 | CRP-cAMP | ugpQ | 2.085693237 | up | up |
4 | CRP-cAMP | ugpC | 1.438960585 | up | up |
5 | CRP-cAMP | ugpB | 1.527292985 | up | up |
6 | CRP-cAMP | rhaB | 2.909109432 | up | up |
7 | CRP-cAMP | cytR | 2.119101207 | up | up |
8 | CRP-cAMP | fis | 1.887330412 | up/down | up/down |
9 | FhlA-Formate | hyfA | 2.509458668 | up | up |
10 | Fis | relA | 1.595459732 | up | up |
11 | GntR | idnK | 1.591861262 | down | down |
12 | Lrp | livJ | 1.380451883 | down | down |
13 | MalT-Maltotriose-ATP | malZ | 1.44543234 | up | up |
14 | NarL-Phosphorylated | fdhF | 2.059069186 | up | up |
15 | NtrC-Phosphorylated | astC | 2.256990592 | up | up |
16 | ArgR-L-arginine | astC | 1.505034 | down | up |
17 | CRP-cAMP | nagE | 1.501987378 | up/down | up |
18 | CRP-cAMP | rpoS | 2.319114034 | up/down | down |
19 | OmpR-Phosphorylated | nmpC | 1.572242248 | up | down |
20 | ArcA-Phosphorylated | aceE | 1.998375233 | down | down |
21 | ArcA-Phosphorylated | appC | 2.066734924 | up | up |
22 | CRP-cAMP | entC | 2.93996178 | up | up |
23 | CRP-cAMP | fepA | 3.821927836 | up | up |
24 | CRP-cAMP | fumA | 3.496049117 | up | up |
25 | CRP-cAMP | gadB | 2.197333426 | down | down |
26 | CRP-cAMP | galP | 2.37334941 | up | up |
27 | CRP-cAMP | gapA | 1.811986697 | up | up |
28 | CRP-cAMP | ompF | 1.315706561 | up | up |
29 | FruR | acnA | 1.633652931 | up | up |
30 | FruR | glk | 2.112996214 | down | down |
31 | GadE | gadB | 1.973757857 | up | up |
32 | Hns | gadB | 1.78680429 | down | down |
33 | LexA | uvrC | 1.590391147 | down | down |
34 | MetJ-S-adenosylmethionine | metE | 3.264214502 | down | down |
35 | MetJ-S-adenosylmethionine | metR | 1.611151228 | down | down |
36 | MetR-Homocysteine | metE | 3.45265202 | up | up |
37 | PhoP-Phosphorylated | rstA | 1.6475787 | up | up |
38 | CRP-cAMP | prpR | 3.147648347 | up/down | up |
39 | Fnr | fdhF | 1.985483486 | up/down | up |
40 | CRP-cAMP | nagE | 1.501987378 | up/down | up |
41 | NarP-Phosphorylated | fdhFp | 1.645007039 | up/down | up |
42 | NarP-Phosphorylated | fdnG | 2.778075473 | up/down | down |
43 | Fnr | dcuS | 1.359810967 | down | up |
44 | Fnr | purM | 1.427076396 | up | down |