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Table 2 Numbers of TDFs called significant at various thresholds.

From: GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data

Statistic

Randomized

Observed

FDR

13.4

1017.8

2037

50%

20.2

481.9

1202

40%

30.0

163.2

543

30%

40.1

53.9

270

20%

57.2

8.3

83

10%

76.5

1.4

28

5%

  1. Statistic: score of GOGOTstat satisfying given FDRs.
  2. Randomized: average number called significant by analyzing 1,000 randomly permutated HiCEP expression matrices.
  3. Observed: number called significant by analysing the original HiCEP expression matrix of 10,624 TDFs and 10 samples.
  4. The FDR is defined as the percentage of falsely significant TDFs compared to the TDFs called significant.
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Algorithms for Molecular Biology

ISSN: 1748-7188