Skip to main content

Table 4 Comparison of classification accuracies versus EvoFold.

From: RNAstrand: reading direction of structured RNAs in multiple sequence alignments

   

Naïve EvoFold-based classification

   

correct

incorrect

RNAstrand

fwd

correct

123 [111;12]

16 [15;1]

  

incorrect

17 [17; 0]

11 [8;3]

 

rev

correct

121 [109;12]

12 [11;1]

  

incorrect

19 [19; 0]

15 [12;3]

 

all

correct

244 [220;24]

28 [26;2]

  

incorrect

36 [36; 0]

26 [20;6]

  1. Strand prediction of RNAstrand compared to naïve prediction of EvoFold. The first row of the table refers to alignments of known ncRNA loci given in the direction of the ncRNA. The second row belongs to the corresponding reverse complementary alignments. The last row summarizes the first and second row. First numbers in brackets give classifications of alignments containing miRNAs and second numbers belong to alignments containing other ncRNAs.