Skip to main content

Table 1 Geometrical parameters of the hook curve

From: "Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures

Hook parameter

symbol

typical range

characteristics

Start point

Σ(0) ≈ Σstart,

1.0 – 2.5

Non-specific signal

 

Δ(0) ≈ Δstart

0.0 – 0.15

PM/MM-gain (N)

End point

Σ(∞),

3.5 – 4.8

Saturation signal

 

Δ(∞)

0

PM/MM-gain (as)

Width

β = Σ(∞)-Σ(0)

2.2 – 3.2

Measuring range, non- specific binding strength in logarithmic scale

asymptotic height

α

0.75 – 1.1

PM/MM-gain (S)

decay constant

λ

0.5 – 1.5

Decay rate of the density distribution of the Σ-values; this S/N-index characterizes the mean ratio of specific and non- specific binding (S/N- ratio) in the logarithmic scale.

Expression index

φ = (β - 1 2 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaqcfa4aaSaaaeaacqaIXaqmaeaacqaIYaGmaaaaaa@2E55@ Δ(0)) - λ ≈ β - λ

1.5 – 2.5

Mean specific signal in logarithmic scale