Figure 6
From: "Hook"-calibration of GeneChip-microarrays: Theory and algorithm
Positional dependent sensitivity profiles: The upper panel shows the single-nucleotide (SN) profiles for the PM and MM for non-specific and specific hybridization. The profiles are calculated using the intensity data shown in Figure 5 (Eq. (23)). The lower panel shows the NN-profiles of the PM for non-specific hybridization and the respective SN-profiles (lines) which are re-plotted from the upper panel (open symbols). Typically the values increase according to BA BT BG BC (with B = A, T, G, C; see arrows in the figure).