TY - BOOK AU - von Mises, R. PY - 1939 DA - 1939// TI - Probability, Statistics and Truth. MacMillan ID - von Mises1939 ER - TY - BOOK AU - Brillouin, L. PY - 1971 DA - 1971// TI - Science and Information Theory ID - Brillouin1971 ER - TY - CHAP AU - Kolmogorov, A. PY - 1965 DA - 1965// TI - Three approaches to the quantitative definition of information BT - Problemi Pederachi Inf ID - Kolmogorov1965 ER - TY - JOUR AU - Lempel, A. AU - Ziv, J. PY - 1976 DA - 1976// TI - On the complexity of finite sequences JO - IEEE Transactions on Information Theory VL - 22 UR - https://doi.org/10.1109/TIT.1976.1055501 DO - 10.1109/TIT.1976.1055501 ID - Lempel1976 ER - TY - BOOK AU - Cover, T. M. AU - Thomas, J. A. PY - 1991 DA - 1991// TI - Elements of Information Theory UR - https://doi.org/10.1002/0471200611 DO - 10.1002/0471200611 ID - Cover1991 ER - TY - CHAP AU - Blaidsell, B. PY - 1986 DA - 1986// TI - A measure of the similarity of sets of sequences not requiring sequence alignment BT - Proceedings of the National Academy of Sciences ID - Blaidsell1986 ER - TY - JOUR AU - Edgar, R. PY - 2004 DA - 2004// TI - Local homology recognition and distance measures in linear time using compressed amino-acid alphabets JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh180 DO - 10.1093/nar/gkh180 ID - Edgar2004 ER - TY - JOUR AU - Ferragina, P. AU - Giancarlo, R. AU - Greco, V. AU - Manzini, G. AU - Valiente, G. PY - 2007 DA - 2007// TI - Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-252 DO - 10.1186/1471-2105-8-252 ID - Ferragina2007 ER - TY - JOUR AU - Hao, B. AU - Qi, J. PY - 2004 DA - 2004// TI - Procaryote phylogeny without sequence alignment: from avoidance singature to composition distance JO - Journal of Bioinformatics and Computational Biology VL - 2 UR - https://doi.org/10.1142/S0219720004000442 DO - 10.1142/S0219720004000442 ID - Hao2004 ER - TY - JOUR AU - Höhl, M. AU - Rigutsos, I. AU - Ragan, M. A. PY - 2006 DA - 2006// TI - Pattern-based phylogenetic distance estimation and tree recosntruction JO - Evolutionary Bioinformatics Online VL - 2 ID - Höhl2006 ER - TY - JOUR AU - Li, M. AU - Chen, X. AU - Li, X. AU - Ma, B. AU - Vitányi, P. PY - 2004 DA - 2004// TI - The similarity metric JO - IEEE Transactions on Information Theory VL - 50:12 UR - https://doi.org/10.1109/TIT.2004.838101 DO - 10.1109/TIT.2004.838101 ID - Li2004 ER - TY - JOUR AU - Otu, H. AU - Sayood, K. PY - 2003 DA - 2003// TI - A new sequence distance measure for phylogenetic tree reconstruction JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg295 DO - 10.1093/bioinformatics/btg295 ID - Otu2003 ER - TY - JOUR AU - Qi, J. AU - Wang, B. AU - Hao, B. PY - 2004 DA - 2004// TI - Whole proteome prokaryote phylogeny without sequence alignment: A k-string composition approach JO - Molecular Evolution VL - 58 UR - https://doi.org/10.1007/s00239-003-2493-7 DO - 10.1007/s00239-003-2493-7 ID - Qi2004 ER - TY - JOUR AU - Ulitsky, I. AU - Burstein, D. AU - Tuller, T. AU - Chor, B. PY - 2006 DA - 2006// TI - The average common substring approach to phylogenetic reconstruction JO - Journal of Computational Biology VL - 13 UR - https://doi.org/10.1089/cmb.2006.13.336 DO - 10.1089/cmb.2006.13.336 ID - Ulitsky2006 ER - TY - JOUR AU - Vinga, S. AU - Almeida, J. PY - 2004 DA - 2004// TI - Alignment-free sequence comparison – a review JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg392 DO - 10.1093/bioinformatics/btg392 ID - Vinga2004 ER - TY - JOUR AU - Helden, J. V. PY - 2004 DA - 2004// TI - Metrics for comparing regulatory sequences on the basis of pattern counts JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg425 DO - 10.1093/bioinformatics/btg425 ID - Helden2004 ER - TY - JOUR AU - Wu, T. J. AU - Bruke, J. AU - Davison, D. PY - 1997 DA - 1997// TI - A measure of dna dissimilarity based on the mahalanobis distance between frequencies of words JO - Biometrics VL - 53 UR - https://doi.org/10.2307/2533509 DO - 10.2307/2533509 ID - Wu1997 ER - TY - BOOK AU - Gatlin, L. L. PY - 1972 DA - 1972// TI - Information Theory and the Living System ID - Gatlin1972 ER - TY - CHAP AU - Apostolico, A. ED - Apostolico, A. ED - Galil, Z. PY - 1985 DA - 1985// TI - The myriad virtues of suffix trees BT - Combinatorial Algorithms on words PB - Springer-Verlang CY - Berlin UR - https://doi.org/10.1007/978-3-642-82456-2_6 DO - 10.1007/978-3-642-82456-2_6 ID - Apostolico1985 ER - TY - JOUR AU - Na, J. AU - Apostolico, A. AU - Iliopoulos, C. S. AU - Park, K. PY - 2003 DA - 2003// TI - Truncated suffix trees and their application to data compression JO - Theoretical Computer Science VL - 304 UR - https://doi.org/10.1016/S0304-3975(03)00053-7 DO - 10.1016/S0304-3975(03)00053-7 ID - Na2003 ER - TY - STD TI - PHYLIP, a free package of programs for inferring phylogenies. http://evolution.genetics.washington.edu/phylip.html UR - http://evolution.genetics.washington.edu/phylip.html ID - ref21 ER -