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Table 1 Syntenator multiple gene order alignments

From: Syntenator: Multiple gene order alignments with a gene-specific scoring function

Alignment order: MRHD Mouse Rat Human Dog
Number of blocks 304 301 289 328
Mean length 48.2 41.4 44.8 42.7
Genes in alignments 14665 (60%) 12451 (53%) 12933 (56%) 14018 (77%)
Block size in Mb 1820.1 1832.0 2416.6 1694.4
Alignment order: HDMR Mouse Rat Human Dog
Number of blocks 367 397 345 331
Mean length 42.6 45.7 42.6 36.3
Genes in alignments 15650 (64%) 18151 (78%) 14698 (63%) 12036 (66%)
Block size in Mb 1772.6 1923.6 2438.4 1815.4
  1. Two alternative Syntenator multiple gene order alignments of mouse (M), rat (R), human (H) and dog (D) are shown to demonstrate the dependence of the alignment outcome on the alignment order of species. The proportion of genes in alignments relative to the total gene set is shown in percentage. The mean length of a block is the ratio of Genes in alignments/Number of blocks.