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Figure 1 | Algorithms for Molecular Biology

Figure 1

From: Protein sequence and structure alignments within one framework

Figure 1

Alignment quality from different methods. Each bar shows the value of the cost function (eq. 6) for alignments after optimizing gap penalties and zero-offset added to score matrices. Random: score matrices filled with gaussian distributed random numbers; blosum : a blosum62 matrix, seq frag: fragments from a pure sequence classification, struct frag: fragments from a pure structural classification; seq+struct frag: fragments from a combined sequence and structure classification.

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Algorithms for Molecular Biology

ISSN: 1748-7188