Table 1 Sum-of-pairs scores of various alignment programs on the benchmark database IRMBASE 2
From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Method (Protein) | REF1 | REF2 | REF3 | REF4 | Total |
|---|---|---|---|---|---|
DIALIGN-TX | 89.42 | 94.90 | 93.75 | 93.64 | 92.93 |
DIALIGN-T 0.2.2 | 89.670 | 94.190 | 93.93 0 | 93.120 | 92.730 |
DIALIGN 2.2 | 90.430 | 93.40- | 91.78-- | 92.98- | 92.15-- |
CLUSTAL W2 | 07.13-- | 10.63-- | 19.87-- | 26.17-- | 15.95-- |
T-COFFEE 5.56 | 72.67-- | 77.80-- | 83.03-- | 83.48- | 79.24-- |
POA V2 | 87.56- | 49.57-- | 41.90-- | 37.56-- | 54.15-- |
MAFFT 6.240 L-INSi | 82.780 | 84.29- | 84.15-- | 82.42-- | 84.41-- |
MAFFT 6.240 E-INSi | 90.53 0 | 94.370 | 93.110 | 94.79 + | 93.20 + |
MUSCLE 3.7 | 32.67-- | 34.82-- | 54.19-- | 57.84-- | 44.88-- |
PROBCONS 1.12 | 78.78-- | 86.82-- | 87.29- | 87.69-- | 85.15-- |