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Table 10 Run time on BALIBASE 3 and BRAliBase II

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method Average runtime on BALIBASE 3 Average runtime on BRAliBase II
DIALIGN-TX 1.0 33.37 0.15
DIALIGN-T 0.2.2 27.79 0.08
DIALIGN 2.2 45.41 0.09
CLUSTAL W2 8.72 0.07
T-COFFEE 5.56 315.78 1.95
POA V2 8.07 0.04
MAFFT 6.240 L-INSi 19.51 0.26
MAFFT 6.240 E-INSi 28.26 0.27
MUSCLE 3.7 10.49 0.05
PROBCONS(RNA) 1.12(1.10) 168.65 0.24
  1. Average running time (in seconds) per multiple alignment for sequence families on BALIBASE 3 and BRAliBase II. Program runs were performed on a Linux workstation with an 3.2 GHz Pentium 4 processor and 2 GB RAM.