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Table 2 Column scores of different programs on IRMBASE 2

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (Protein) REF1 REF2 REF3 REF4 Total
DIALIGN-TX 64.17 77.36 70.30 72.23 71.02
DIALIGN-T 0.2.2 67.040 75.810 70.400 70.44 0 70.930
DIALIGN 2.2 68.52 0 73.32- 65.34- 69.50- 69.17--
CLUSTAL W2 00.00-- 00.00-- 00.11-- 02.86-- 00.74--
T-COFFEE 5.56 34.84-- 40.87-- 43.62-- 49.56-- 42.22--
POA V2 50.99- 16.95-- 11.79-- 10.18-- 22.47--
MAFFT 6.240 L-INSi 37.81-- 39.54-- 32.79-- 38.75-- 32.22--
MAFFT 6.240 E-INSi 45.70- 52.37-- 43.11-- 54.82-- 49.00--
MUSCLE 3.7 04.65-- 06.87-- 14.80-- 19.65-- 11.49--
PROBCONS 1.12 36.77-- 43.47-- 41.89-- 43.56-- 41.42--
  1. Average column scores (CS) of the benchmarked programs on the core blocks of IRM-BASE 2. The symbols are analogous to Table 1.