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Table 3 Sum-of-pairs scores on DIRMBASE 1

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (DNA) REF1 REF2 REF3 REF4 Total
DIALIGN-TX 94.38 92.85 95.44 95.70 94.59
DIALIGN-T 0.2.2 64.00-- 61.22-- 64.96-- 65.24-- 63.85--
DIALIGN 2.2 92.61- 91.10- 94.62- 94.13- 93.12--
CLUSTAL W2 06.79-- 08.27-- 18.51-- 29.09-- 15.66--
T-COFFEE 5.56 14.71-- 18.88-- 32.08-- 43.39-- 27.62--
POA V2 32.03-- 27.40-- 28.78-- 32.18-- 30.10--
MAFFT 6.240 L-INSi 52.40-- 48.81-- 49.77-- 57.47-- 52.36--
MAFFT 6.240 E-INSi 92.420 84.15-- 87.91- 89.36- 88.46--
MUSCLE 3.7 48.17-- 54.40-- 56.57-- 60.24-- 56.84--
PROBCONSRNA 1.10 13.00-- 12.94-- 20.28-- 32.56-- 19.69--
  1. Average sum-of-pair scores (SPS) of the benchmarked programs on the core blocks of DIRMBASE 1. The symbols are analogous to Table 1.