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Table 4 Column scores on DIRMBASE 1.

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (DNA) REF1 REF2 REF3 REF4 Total
DIALIGN-TX 74.39 69.03 71.57 75.11 72.52
DIALIGN-T 0.2.2 29.60-- 28.63-- 35.51-- 35.85-- 32.40--
DIALIGN 2.2 69.950 68.190 71.250 72.480 70.47-
CLUSTAL W2 00.00-- 00.00-- 02.19-- 04.99-- 01.80--
T-COFFEE 5.56 00.00-- 00.18-- 04.01-- 08.44-- 03.16--
POA V2 05.63-- 07.32-- 04.12-- 06.81-- 05.97--
MAFFT 6.240 L-INSi 21.45-- 11.93-- 16.02-- 22.30-- 17.93--
MAFFT 6.240 E-INSi 40.28-- 41.99-- 45.77-- 51.01-- 44.76--
MUSCLE 3.7 14.18-- 16.18-- 19.62-- 30.43-- 20.10--
PROBCONSRNA 1.10 00.73-- 00.05-- 01.34-- 04.31-- 01.61--
  1. Average column scores (CS) of the benchmarked programs on the core blocks of DIRM-BASE 1. The symbols are analogous to Table 1.