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Table 5 Program run time on IRMBASE 2 and DIRMBASE 1

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method Average runtime on IRMBASE 2 Average runtime on DIRMBASE 1
DIALIGN-TX 1.0 4.47 9.84
DIALIGN-T 0.2.2 2.73 2.31
DIALIGN 2.2 4.98 4.82
CLUSTAL W2 1.86 1.36
T-COFFEE 5.56 26.41 365.88
POA V2 1.81 1.20
MAFFT 6.240 L-INSi 8.47 5.33
MAFFT 6.240 E-INSi 15.35 8.39
MUSCLE 3.7 6.34 4.87
PROBCONS(RNA) 1.12(1.10) 28.27 18.54
  1. Average running time (in seconds) per multiple alignment for sequence families on IRMBASE 2 and DIRMBASE 1. Program runs were performed on a Linux workstation with an 3.2 GHz Pentium 4 processor and 2 GB RAM.