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Table 6 Sum-of-pairs scores on BALIBASE 3

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (Protein) RV11 RV12 RV20 RV30 RV40 RV50 Total
DIALIGN-TX 51.52 89.18 87.87 76.18 83.65 82.28 78.83
DIALIGN-T 0.2.2 49.30- 88.760 86.290 74.660 81.95- 80.14- 77.31--
DIALIGN 2.2 50.730 86.66- 86.910 74.050 83.310 80.690 77.52--
CLUSTAL W2 50.060 86.430 85.160 72.50- 78.930 74.24- 75.36--
T-COFFEE 5.56 58.22++ 92.27++ 90.92++ 79.09+ 86.03+ 86.09+ 82.41++
POA V2 37.96-- 83.19-- 85.28- 71.93- 78.22-- 71.49-- 72.17--
MAFFT 6.240 L-INSi 67.11 ++ 93.63++ 92.67 ++ 85.55++ 91.97 ++ 90.00 ++ 87.07 ++
MAFFT 6.240 E-INSi 66.00++ 93.61++ 92.64++ 86.12 ++ 91.46++ 89.91++ 86.83++
MUSCLE 3.7 57.90+ 91.67++ 89.17+ 80.60+ 87.26+ 83.390 82.19++
PROBCONS 1.12 66.99++ 94.12 ++ 91.68++ 84.61++ 90.24++ 89.28++ 86.40++
  1. Average sum-of-pair scores (SPS) of the benchmarked programs on the core blocks of BALIBASE 3. The symbols are analogous to Table 1.